ECE1508F 2005: Topics in Computational Molecular Biology
Project proposals due Oct 19 (note revised due date!)
Instructor: Brendan J. Frey
Electrical and Computer Engineering
University of Toronto
Information sheet for this course
Link to NCBI version of Human Molecular Genetics 2
List of potential papers (assigned papers at top):
- Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs. Brendan Frey, Sep 14/19, 2005.
- Listening to silence and understanding nonsense: Exonic mutations that affect splicing. Ofer Shai, Sep 21/26, 2005.
- Review of non-coding RNAs. Functions of microRNAs. Jim Huang, Sep 28, 2005.
- Sequence alignment, with insertions, deletions, etc. Inmar Givoni, Oct 3, 2005.
- Cell-based DNA cloning. PCR, DNA sequencing, and in vitro mutagenesis. Isaac Li, Oct 5, 2005.
- Class cancelled, Oct 12, 2005.
- Microarray technologies. Eddie Ng, Oct 17, 2005.
- Microarray technologies. Eddie Ng, Oct 19, 2005.
- Mass spectrometry. Clement Chung, Oct 24, 2005.
- Mass spectrometry. Clement Chung, Oct 26, 2005.
- Predicting gene functions. Quaid Morris, Oct 31, 2005.
- Predicting gene functions. Quaid Morris, Nov 2, 2005.
- Single Nucleotide Polymorphisms (SNPs). Abida Raouf, Nov 7, 2005.
- Single Nucleotide Polymorphisms (SNPs). Abida Raouf, Nov 9, 2005.
- Non-coding RNA and RNA secondary (2-D) structure. Sarah Ali, Nov 14, 2005.
- Gene finding methods based on DNA sequence. Nov 21, 2005.
- Human immune response. Emad Shenouda, Nov 23, 2005.
- The transcriptional landscape of the mammalian genome.
- RNA structure: Reading the ribosome.
- Reporter assays.
- Transcriptional regulation.
- Protein-protein interaction networks.